IL_9BDP_121

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_121 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1742

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

9BDP|1|A28S|G|482
9BDP|1|A28S|G|483
9BDP|1|A28S|U|484
9BDP|1|A28S|C|485
*
9BDP|1|A28S|G|671
9BDP|1|A28S|C|672

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain ALNW

60S ribosomal protein L28