IL_9BDP_125

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAU*ACC

Length

7 nucleotides

Bulged bases

9BDP|1|A28S|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_125 not in the Motif Atlas

Geometric match to IL_5M0H_001

Geometric discrepancy: 0.2643

The information below is about IL_5M0H_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

9BDP|1|A28S|G|507
9BDP|1|A28S|G|508
9BDP|1|A28S|A|509
9BDP|1|A28S|U|510
*
9BDP|1|A28S|A|649
9BDP|1|A28S|C|650
9BDP|1|A28S|C|651

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL13

Large ribosomal subunit protein eL13

Chain AL28

60S ribosomal protein L27a