IL_9BDP_151

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_151 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.1127

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9BDP|1|A28S|C|1551
9BDP|1|A28S|G|1552
9BDP|1|A28S|A|1553
9BDP|1|A28S|A|1554
9BDP|1|A28S|G|1555
*
9BDP|1|A28S|U|1572
9BDP|1|A28S|G|1573
9BDP|1|A28S|G|1574
9BDP|1|A28S|A|1575
9BDP|1|A28S|G|1576

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL19

60S ribosomal protein L19

Chain AL43

60S ribosomal protein L37a