3D structure

PDB id
9BDP (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UUU*AGA
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9BDP_168 not in the Motif Atlas
Homologous match to IL_8C3A_050
Geometric discrepancy: 0.1083
The information below is about IL_8C3A_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_52767.5
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

9BDP|1|A28S|U|1861
9BDP|1|A28S|U|1862
9BDP|1|A28S|U|1863
*
9BDP|1|A28S|A|1871
9BDP|1|A28S|G|1872
9BDP|1|A28S|A|1873

Current chains

Chain A28S
28S rRNA

Nearby chains

Chain A5S
5S ribosomal RNA; 5S rRNA
Chain AL10
Ribosomal protein L10
Chain AL29
Large ribosomal subunit protein eL29

Coloring options:


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