IL_9BDP_171
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGC*GG
- Length
- 5 nucleotides
- Bulged bases
- 9BDP|1|A28S|G|1919
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_171 not in the Motif Atlas
- Geometric match to IL_7D7V_002
- Geometric discrepancy: 0.3575
- The information below is about IL_7D7V_002
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_00225.14
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 50
Unit IDs
9BDP|1|A28S|U|1918
9BDP|1|A28S|G|1919
9BDP|1|A28S|C|1920
*
9BDP|1|A28S|G|2063
9BDP|1|A28S|G|2064
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL07
- 60S ribosomal protein L7
- Chain AL14
- 60S ribosomal protein L14
- Chain AL16
- Large ribosomal subunit protein uL13
- Chain AL20
- 60S ribosomal protein L18a
- Chain AL33
- 60S ribosomal protein L35a
Coloring options: