IL_9BDP_222
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 9BDP|1|A28S|G|4084
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_222 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.213
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
9BDP|1|A28S|G|4082
9BDP|1|A28S|U|4083
9BDP|1|A28S|G|4084
9BDP|1|A28S|A|4085
9BDP|1|A28S|G|4086
9BDP|1|A28S|G|4087
9BDP|1|A28S|C|4088
*
9BDP|1|A28S|G|4161
9BDP|1|A28S|C|4162
9BDP|1|A28S|U|4163
9BDP|1|A28S|C|4164
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL02
- 60S ribosomal protein L8
- Chain AL08
- Large ribosomal subunit protein eL8
- Chain AL25
- Large ribosomal subunit protein uL23
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