IL_9BDP_236

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

9BDP|1|A28S|A|4518, 9BDP|1|A28S|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_236 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.1234

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

9BDP|1|A28S|C|4458
9BDP|1|A28S|U|4459
*
9BDP|1|A28S|A|4517
9BDP|1|A28S|A|4518
9BDP|1|A28S|C|4519
9BDP|1|A28S|G|4520

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL16

Large ribosomal subunit protein uL13

Chain AL23

60S ribosomal protein L23