IL_9BDP_253
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CCUCGGAUAGC*GUGCGGAGAG
- Length
- 21 nucleotides
- Bulged bases
- 9BDP|1|A28S|A|4764, 9BDP|1|A28S|G|4870, 9BDP|1|A28S|G|4873, 9BDP|1|A28S|A|4876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_253 not in the Motif Atlas
- Homologous match to IL_8P9A_352
- Geometric discrepancy: 0.5506
- The information below is about IL_8P9A_352
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28855.1
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
9BDP|1|A28S|C|4756
9BDP|1|A28S|C|4757
9BDP|1|A28S|U|4758
9BDP|1|A28S|C|4759
9BDP|1|A28S|G|4760
9BDP|1|A28S|G|4761
9BDP|1|A28S|A|4762
9BDP|1|A28S|U|4763
9BDP|1|A28S|A|4764
9BDP|1|A28S|G|4765
9BDP|1|A28S|C|4766
*
9BDP|1|A28S|G|4868
9BDP|1|A28S|U|4869
9BDP|1|A28S|G|4870
9BDP|1|A28S|C|4871
9BDP|1|A28S|G|4872
9BDP|1|A28S|G|4873
9BDP|1|A28S|A|4874
9BDP|1|A28S|G|4875
9BDP|1|A28S|A|4876
9BDP|1|A28S|G|4877
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL06
- 60S ribosomal protein L6
- Chain AL09
- 60S ribosomal protein L9
- Chain AL14
- 60S ribosomal protein L14
- Chain AL16
- Large ribosomal subunit protein uL13
- Chain AL20
- 60S ribosomal protein L18a
Coloring options: