IL_9BDP_266
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CA*UCG
- Length
- 5 nucleotides
- Bulged bases
- 9BDP|1|A5S|C|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_266 not in the Motif Atlas
- Homologous match to IL_8C3A_143
- Geometric discrepancy: 0.2108
- The information below is about IL_8C3A_143
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 112
Unit IDs
9BDP|1|A5S|C|15
9BDP|1|A5S|A|16
*
9BDP|1|A5S|U|62
9BDP|1|A5S|C|63
9BDP|1|A5S|G|64
Current chains
- Chain A5S
- 5S rRNA
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL05
- 60S ribosomal protein L5
- Chain AL10
- Ribosomal protein L10
- Chain AL11
- 60S ribosomal protein L11
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