IL_9BDP_285
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 9BDP|1|A18S|C|1331, 9BDP|1|A18S|U|1494, 9BDP|1|A18S|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_285 not in the Motif Atlas
- Geometric match to IL_4V88_510
- Geometric discrepancy: 0.1497
- The information below is about IL_4V88_510
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62984.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
9BDP|1|A18S|U|1329
9BDP|1|A18S|G|1330
9BDP|1|A18S|C|1331
9BDP|1|A18S|A|1332
9BDP|1|A18S|U|1333
9BDP|1|A18S|G|1334
9BDP|1|A18S|G|1335
*
9BDP|1|A18S|U|1492
9BDP|1|A18S|C|1493
9BDP|1|A18S|U|1494
9BDP|1|A18S|G|1495
9BDP|1|A18S|U|1496
9BDP|1|A18S|G|1497
9BDP|1|A18S|A|1498
9BDP|1|A18S|U|1499
9BDP|1|A18S|G|1500
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain ANG
- Angiogenin
- Chain AS03
- 40S ribosomal protein S3
- Chain AS10
- 40S ribosomal protein S10
- Chain AS20
- 40S ribosomal protein S20
- Chain AS29
- 40S ribosomal protein S29
- Chain MRNA
- mRNA
Coloring options: