IL_9BDP_290

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUUA*UUGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_290 not in the Motif Atlas

Geometric match to IL_8SP9_002

Geometric discrepancy: 0.2866

The information below is about IL_8SP9_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

9BDP|1|A18S|G|1727
9BDP|1|A18S|U|1728
9BDP|1|A18S|U|1729
9BDP|1|A18S|U|1730
9BDP|1|A18S|A|1731
*
9BDP|1|A18S|U|1803
9BDP|1|A18S|U|1804
9BDP|1|A18S|G|1805
9BDP|1|A18S|A|1806
9BDP|1|A18S|C|1807

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL23

60S ribosomal protein L23

Chain AS08

40S ribosomal protein S8