IL_9BDP_292

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

9BDP|1|A28S|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_292 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.1902

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9BDP|1|A28S|A|12
9BDP|1|A28S|U|13
9BDP|1|A28S|C|14
*
9BDP|1|A58S|G|143
9BDP|1|A58S|U|144

Current chains

Chain A28S

28S rRNA

Chain A58S

5.8S rRNA

Nearby chains

Chain AL08

Large ribosomal subunit protein eL8

Chain AL15

60S ribosomal protein L15

Chain AL25

Large ribosomal subunit protein uL23