IL_9BDP_298

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCGUG*CCGG

Length

9 nucleotides

Bulged bases

9BDP|1|A28S|U|492

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_298 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2823

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9BDP|1|A28S|C|489
9BDP|1|A28S|C|490
9BDP|1|A28S|G|491
9BDP|1|A28S|U|492
9BDP|1|A28S|G|493
*
9BDP|1|A28S|C|661
9BDP|1|A28S|C|662
9BDP|1|A28S|G|663
9BDP|1|A28S|G|664

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL18

Large ribosomal subunit protein eL18