IL_9BDP_304

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCGAG*CGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_304 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3286

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9BDP|1|A28S|C|1430
9BDP|1|A28S|C|1431
9BDP|1|A28S|G|1432
9BDP|1|A28S|A|1433
9BDP|1|A28S|G|1434
*
9BDP|1|A28S|C|1450
9BDP|1|A28S|G|1451
9BDP|1|A28S|A|1452
9BDP|1|A28S|G|1453
9BDP|1|A28S|G|1454

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL18

Large ribosomal subunit protein eL18