IL_9BDP_309
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AGGUGU*GCCCU
- Length
- 11 nucleotides
- Bulged bases
- 9BDP|1|A28S|U|1947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_309 not in the Motif Atlas
- Geometric match to IL_6CZR_167
- Geometric discrepancy: 0.3169
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
9BDP|1|A28S|A|1944
9BDP|1|A28S|G|1945
9BDP|1|A28S|G|1946
9BDP|1|A28S|U|1947
9BDP|1|A28S|G|1948
9BDP|1|A28S|U|1949
*
9BDP|1|A28S|G|2034
9BDP|1|A28S|C|2035
9BDP|1|A28S|C|2036
9BDP|1|A28S|C|2037
9BDP|1|A28S|U|2038
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A5S
- 5S ribosomal RNA; 5S rRNA
- Chain AL09
- 60S ribosomal protein L9
- Chain AL10
- Ribosomal protein L10
- Chain AL16
- Large ribosomal subunit protein uL13
- Chain AL20
- 60S ribosomal protein L18a
- Chain AL40
- Large ribosomal subunit protein eL40
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