IL_9BDP_311

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9BDP|1|A28S|A|2002

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_311 not in the Motif Atlas

Homologous match to IL_8P9A_284

Geometric discrepancy: 0.2705

The information below is about IL_8P9A_284

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

9BDP|1|A28S|G|2001
9BDP|1|A28S|A|2002
9BDP|1|A28S|G|2003
9BDP|1|A28S|U|2004
9BDP|1|A28S|G|2005
*
9BDP|1|A28S|C|2014
9BDP|1|A28S|U|2015
9BDP|1|A28S|C|2016

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL12

uL11