IL_9BDP_312

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAGUGGC*GCGCC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_312 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3766

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

9BDP|1|A28S|G|2541
9BDP|1|A28S|G|2542
9BDP|1|A28S|A|2543
9BDP|1|A28S|G|2544
9BDP|1|A28S|U|2545
9BDP|1|A28S|G|2546
9BDP|1|A28S|G|2547
9BDP|1|A28S|C|2548
*
9BDP|1|A28S|G|2771
9BDP|1|A28S|C|2772
9BDP|1|A28S|G|2773
9BDP|1|A28S|C|2774
9BDP|1|A28S|C|2775

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL34

60S ribosomal protein L34

Chain AL38

Large ribosomal subunit protein eL38