IL_9BDP_318

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGC*GUAAA

Length

8 nucleotides

Bulged bases

9BDP|1|A28S|A|3746, 9BDP|1|A28S|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_318 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2368

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9BDP|1|A28S|U|3704
9BDP|1|A28S|G|3705
9BDP|1|A28S|C|3706
*
9BDP|1|A28S|G|3744
9BDP|1|A28S|U|3745
9BDP|1|A28S|A|3746
9BDP|1|A28S|A|3747
9BDP|1|A28S|A|3748

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL02

60S ribosomal protein L8