IL_9BDP_325

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_325 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3806

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

9BDP|1|A18S|G|535
9BDP|1|A18S|A|536
9BDP|1|A18S|C|537
*
9BDP|1|A18S|G|546
9BDP|1|A18S|G|547
9BDP|1|A18S|C|548
9BDP|1|A18S|C|549

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS30

40S ribosomal protein S30