IL_9BKD_015

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGGAUAAC*GCUAAUA(OMC)A

Length

17 nucleotides

Bulged bases

9BKD|1|A|U|172

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BKD|1|A|U|144
9BKD|1|A|G|145
9BKD|1|A|G|146
9BKD|1|A|A|147
9BKD|1|A|U|148
9BKD|1|A|A|149
9BKD|1|A|A|150
9BKD|1|A|C|151
*
9BKD|1|A|G|167
9BKD|1|A|C|168
9BKD|1|A|U|169
9BKD|1|A|A|170
9BKD|1|A|A|171
9BKD|1|A|U|172
9BKD|1|A|A|173
9BKD|1|A|OMC|174
9BKD|1|A|A|175

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

Small ribosomal subunit protein eS6

Chain T

Small ribosomal subunit protein eS24