IL_9BKD_016

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGU*AG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_016 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.1931

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

9BKD|1|A|C|151
9BKD|1|A|U|152
9BKD|1|A|G|153
9BKD|1|A|U|154
*
9BKD|1|A|A|164
9BKD|1|A|G|165
9BKD|1|A|A2M|166
9BKD|1|A|G|167

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

Small ribosomal subunit protein eS6

Chain T

Small ribosomal subunit protein eS24