IL_9BKD_017

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_017 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.19

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9BKD|1|A|C|188
9BKD|1|A|U|189
9BKD|1|A|G|190
9BKD|1|A|A|191
9BKD|1|A|C|192
*
9BKD|1|A|G|207
9BKD|1|A|G|208
9BKD|1|A|A|209
9BKD|1|A|U|210
9BKD|1|A|G|211

Current chains

Chain A

18S rRNA

Nearby chains

Chain R

Small ribosomal subunit protein eS8