IL_9BKD_023

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

9BKD|1|A|U|368, 9BKD|1|A|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_023 not in the Motif Atlas

Homologous match to IL_8C3A_411

Geometric discrepancy: 0.2398

The information below is about IL_8C3A_411

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71854.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9BKD|1|A|U|366
9BKD|1|A|U|367
9BKD|1|A|U|368
9BKD|1|A|C|369
9BKD|1|A|G|370
9BKD|1|A|A|371
*
9BKD|1|A|U|393
9BKD|1|A|G|394

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS17

Chain R

Small ribosomal subunit protein eS8