IL_9BKD_028

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCCACU*A(OMG)G

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BKD|1|A|C|490
9BKD|1|A|C|491
9BKD|1|A|C|492
9BKD|1|A|A|493
9BKD|1|A|C|494
9BKD|1|A|U|495
*
9BKD|1|A|A|508
9BKD|1|A|OMG|509
9BKD|1|A|G|510

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein eS4, X isoform

Chain D

Small ribosomal subunit protein uS4

Chain T

Small ribosomal subunit protein eS24