IL_9BKD_035

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9BKD|1|A|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_035 not in the Motif Atlas

Geometric match to IL_6UFG_004

Geometric discrepancy: 0.2634

The information below is about IL_6UFG_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

148

Unit IDs

9BKD|1|A|G|606
9BKD|1|A|U|607
9BKD|1|A|C|608
*
9BKD|1|A|G|635
9BKD|1|A|C|636

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain F

Small ribosomal subunit protein eS30

Chain U

Programmed cell death protein 4

Chain Z

Small ribosomal subunit protein uS3