IL_9BKD_038

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_038 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1052

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9BKD|1|A|G|665
9BKD|1|A|U|666
9BKD|1|A|U|667
9BKD|1|A|A2M|668
9BKD|1|A|A|669
9BKD|1|A|A|670
9BKD|1|A|A|671
*
9BKD|1|A|U|1161
9BKD|1|A|C|1162

Current chains

Chain A

18S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein uS12

Chain Q

40S ribosomal protein S26