IL_9BKD_053

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_053 not in the Motif Atlas

Geometric match to IL_5J7L_037

Geometric discrepancy: 0.0817

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9BKD|1|A|C|1047
9BKD|1|A|G|1048
9BKD|1|A|A|1049
9BKD|1|A|A|1050
9BKD|1|A|G|1051
*
9BKD|1|A|C|1067
9BKD|1|A|G|1068
9BKD|1|A|U|1069
9BKD|1|A|A|1070
9BKD|1|A|G|1071

Current chains

Chain A

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S14

Chain Q

40S ribosomal protein S26