IL_9BKD_054
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 9BKD|1|A|C|1153, 9BKD|1|A|U|1155, 9BKD|1|A|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BKD_054 not in the Motif Atlas
- Homologous match to IL_8C3A_443
- Geometric discrepancy: 0.0707
- The information below is about IL_8C3A_443
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47729.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BKD|1|A|C|1091
9BKD|1|A|G|1092
9BKD|1|A|A|1093
*
9BKD|1|A|U|1152
9BKD|1|A|C|1153
9BKD|1|A|U|1154
9BKD|1|A|U|1155
9BKD|1|A|U|1156
9BKD|1|A|G|1157
9BKD|1|A|G|1158
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS17
- Chain E
- Small ribosomal subunit protein uS12
- Chain H
- 40S ribosomal protein S27
- Chain I
- 40S ribosomal protein S13
- Chain J
- 40S ribosomal protein S15a
- Chain L
- 40S ribosomal protein S2
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