IL_9BKD_086

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

9BKD|1|A|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_086 not in the Motif Atlas

Homologous match to IL_8C3A_473

Geometric discrepancy: 0.5117

The information below is about IL_8C3A_473

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

9BKD|1|A|C|1708
9BKD|1|A|G|1709
9BKD|1|A|C|1710
9BKD|1|A|U|1711
*
9BKD|1|A|A|1822
9BKD|1|A|A|1823
9BKD|1|A|A|1824
9BKD|1|A|A|1825
9BKD|1|A|G|1826

Current chains

Chain A

18S rRNA

Nearby chains

Chain 9

60S ribosomal protein L41

Chain E

Small ribosomal subunit protein uS12

Chain U

Programmed cell death protein 4