IL_9BKD_088

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_088 not in the Motif Atlas

Geometric match to IL_7RQB_089

Geometric discrepancy: 0.1692

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

9BKD|1|A|C|1717
9BKD|1|A|G|1718
9BKD|1|A|A|1719
9BKD|1|A|U|1720
*
9BKD|1|A|A|1813
9BKD|1|A|G|1814
9BKD|1|A|A|1815
9BKD|1|A|G|1816

Current chains

Chain A

18S rRNA

Nearby chains

Chain 9

60S ribosomal protein L41

Chain E

Small ribosomal subunit protein uS12