IL_9BLN_014

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GU*ACC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_014 not in the Motif Atlas

Geometric match to IL_4V88_388

Geometric discrepancy: 0.2022

The information below is about IL_4V88_388

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

9BLN|1|A|G|123
9BLN|1|A|U|124
*
9BLN|1|A|A|339
9BLN|1|A|C|340
9BLN|1|A|C|341

Current chains

Chain A

rRNA

Nearby chains

Chain C

Small ribosomal subunit protein eS4, X isoform

Chain R

Small ribosomal subunit protein eS8

Chain S

Small ribosomal subunit protein eS6