IL_9BLN_018

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_018 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.185

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9BLN|1|A|C|188
9BLN|1|A|U|189
9BLN|1|A|G|190
9BLN|1|A|A|191
9BLN|1|A|C|192
*
9BLN|1|A|G|207
9BLN|1|A|G|208
9BLN|1|A|A|209
9BLN|1|A|U|210
9BLN|1|A|G|211

Current chains

Chain A

rRNA

Nearby chains

Chain R

Small ribosomal subunit protein eS8