IL_9BLN_021

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

9BLN|1|A|A|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_021 not in the Motif Atlas

Homologous match to IL_4V88_399

Geometric discrepancy: 0.1328

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

9BLN|1|A|G|312
9BLN|1|A|A|313
9BLN|1|A|U|314
*
9BLN|1|A|A|336
9BLN|1|A|C|337

Current chains

Chain A

rRNA

Nearby chains

Chain C

Small ribosomal subunit protein eS4, X isoform

Chain S

Small ribosomal subunit protein eS6