IL_9BLN_024

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

9BLN|1|A|U|368, 9BLN|1|A|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_024 not in the Motif Atlas

Homologous match to IL_8C3A_411

Geometric discrepancy: 0.2812

The information below is about IL_8C3A_411

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71854.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9BLN|1|A|U|366
9BLN|1|A|U|367
9BLN|1|A|U|368
9BLN|1|A|C|369
9BLN|1|A|G|370
9BLN|1|A|A|371
*
9BLN|1|A|U|393
9BLN|1|A|G|394

Current chains

Chain A

rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS17

Chain R

Small ribosomal subunit protein eS8