IL_9BLN_036
3D structure
- PDB id
- 9BLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUC*GC
- Length
- 5 nucleotides
- Bulged bases
- 9BLN|1|A|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BLN_036 not in the Motif Atlas
- Geometric match to IL_6UFG_004
- Geometric discrepancy: 0.2506
- The information below is about IL_6UFG_004
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 147
Unit IDs
9BLN|1|A|G|606
9BLN|1|A|U|607
9BLN|1|A|C|608
*
9BLN|1|A|G|635
9BLN|1|A|C|636
Current chains
- Chain A
- rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
- Chain F
- Small ribosomal subunit protein eS30
- Chain Z
- Small ribosomal subunit protein uS3
- Chain p
- Programmed cell death protein 4
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