IL_9BLN_039

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_039 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1099

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9BLN|1|A|G|665
9BLN|1|A|U|666
9BLN|1|A|U|667
9BLN|1|A|A2M|668
9BLN|1|A|A|669
9BLN|1|A|A|670
9BLN|1|A|A|671
*
9BLN|1|A|U|1161
9BLN|1|A|C|1162

Current chains

Chain A

rRNA

Nearby chains

Chain E

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein eS26