IL_9BLN_047

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_047 not in the Motif Atlas

Homologous match to IL_4V88_428

Geometric discrepancy: 0.0888

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

9BLN|1|A|A|922
9BLN|1|A|G|923
*
9BLN|1|A|C|1019
9BLN|1|A|A|1020
9BLN|1|A|U|1021
9BLN|1|A|U|1022

Current chains

Chain A

rRNA

Nearby chains

Chain H

Small ribosomal subunit protein eS27

Chain I

Small ribosomal subunit protein uS15

Chain J

Small ribosomal subunit protein uS8