IL_9BLN_048

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

9BLN|1|A|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_048 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.256

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

9BLN|1|A|G|925
9BLN|1|A|A|926
9BLN|1|A|C|927
*
9BLN|1|A|G|1014
9BLN|1|A|U|1015
9BLN|1|A|U|1016
9BLN|1|A|U|1017

Current chains

Chain A

rRNA

Nearby chains

Chain H

Small ribosomal subunit protein eS27

Chain I

Small ribosomal subunit protein uS15

Chain y

Eukaryotic translation initiation factor 3 subunit C