IL_9BLN_053

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGGUUC*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_053 not in the Motif Atlas

Homologous match to IL_4V88_435

Geometric discrepancy: 0.1195

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9BLN|1|A|A|1042
9BLN|1|A|G|1043
9BLN|1|A|G|1044
9BLN|1|A|U|1045
9BLN|1|A|U|1046
9BLN|1|A|C|1047
*
9BLN|1|A|G|1071
9BLN|1|A|U|1072
9BLN|1|A|U|1073

Current chains

Chain A

rRNA

Nearby chains

Chain P

40S ribosomal protein S14

Chain Q

Small ribosomal subunit protein eS26