IL_9BLN_055
3D structure
- PDB id
- 9BLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 9BLN|1|A|C|1153, 9BLN|1|A|U|1155, 9BLN|1|A|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BLN_055 not in the Motif Atlas
- Homologous match to IL_8C3A_443
- Geometric discrepancy: 0.0885
- The information below is about IL_8C3A_443
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47729.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BLN|1|A|C|1091
9BLN|1|A|G|1092
9BLN|1|A|A|1093
*
9BLN|1|A|U|1152
9BLN|1|A|C|1153
9BLN|1|A|U|1154
9BLN|1|A|U|1155
9BLN|1|A|U|1156
9BLN|1|A|G|1157
9BLN|1|A|G|1158
Current chains
- Chain A
- rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS17
- Chain E
- Small ribosomal subunit protein uS12
- Chain H
- Small ribosomal subunit protein eS27
- Chain I
- Small ribosomal subunit protein uS15
- Chain J
- Small ribosomal subunit protein uS8
- Chain L
- Small ribosomal subunit protein uS5
Coloring options: