IL_9BLN_063

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_063 not in the Motif Atlas

Homologous match to IL_4V88_444

Geometric discrepancy: 0.1094

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

9BLN|1|A|C|1230
9BLN|1|A|C|1231
9BLN|1|A|U|1232
*
9BLN|1|A|G|1526
9BLN|1|A|C|1527
9BLN|1|A|G|1528

Current chains

Chain A

rRNA

Nearby chains

Chain Y

Small ribosomal subunit protein uS9

Chain d

Small ribosomal subunit protein eS19

Chain f

Small ribosomal subunit protein uS13