IL_9BLN_075

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGG*C(5MC)G

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_075 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.3125

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9BLN|1|A|C|1363
9BLN|1|A|U|1364
9BLN|1|A|G|1365
9BLN|1|A|G|1366
*
9BLN|1|A|C|1373
9BLN|1|A|5MC|1374
9BLN|1|A|G|1375

Current chains

Chain A

rRNA

Nearby chains

Chain M

Small ribosomal subunit protein eS17

Chain Q

Small ribosomal subunit protein eS26