IL_9BLN_080
3D structure
- PDB id
- 9BLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACU*AUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BLN_080 not in the Motif Atlas
- Geometric match to IL_3SZX_002
- Geometric discrepancy: 0.1327
- The information below is about IL_3SZX_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
9BLN|1|A|A|1537
9BLN|1|A|C|1538
9BLN|1|A|U|1539
*
9BLN|1|A|A|1594
9BLN|1|A|U|1595
9BLN|1|A|U|1596
Current chains
- Chain A
- rRNA
Nearby chains
- Chain V
- Small ribosomal subunit protein uS7
- Chain Y
- Small ribosomal subunit protein uS9
- Chain d
- Small ribosomal subunit protein eS19
- Chain e
- Small ribosomal subunit protein eS25
- Chain f
- Small ribosomal subunit protein uS13
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