IL_9BLN_083

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_083 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1088

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

9BLN|1|A|G|1604
9BLN|1|A|G|1605
9BLN|1|A|G|1606
9BLN|1|A|A|1607
9BLN|1|A|U|1608
9BLN|1|A|C|1609
9BLN|1|A|G|1610
*
9BLN|1|A|C|1629
9BLN|1|A|A|1630
9BLN|1|A|U|1631
9BLN|1|A|G|1632
9BLN|1|A|A|1633
9BLN|1|A|A|1634
9BLN|1|A|C|1635

Current chains

Chain A

rRNA

Nearby chains

Chain d

Small ribosomal subunit protein eS19

Chain f

Small ribosomal subunit protein uS13