IL_9BLN_087
3D structure
- PDB id
- 9BLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 9BLN|1|A|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BLN_087 not in the Motif Atlas
- Homologous match to IL_8C3A_473
- Geometric discrepancy: 0.5059
- The information below is about IL_8C3A_473
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50458.2
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9BLN|1|A|C|1708
9BLN|1|A|G|1709
9BLN|1|A|C|1710
9BLN|1|A|U|1711
*
9BLN|1|A|A|1822
9BLN|1|A|A|1823
9BLN|1|A|A|1824
9BLN|1|A|A|1825
9BLN|1|A|G|1826
Current chains
- Chain A
- rRNA
Nearby chains
- Chain 9
- Small ribosomal subunit protein eS32
- Chain E
- Small ribosomal subunit protein uS12
- Chain W
- Eukaryotic translation initiation factor 1
Coloring options: