IL_9BLN_089

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_089 not in the Motif Atlas

Geometric match to IL_5J7L_333

Geometric discrepancy: 0.1589

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

9BLN|1|A|C|1717
9BLN|1|A|G|1718
9BLN|1|A|A|1719
9BLN|1|A|U|1720
*
9BLN|1|A|A|1813
9BLN|1|A|G|1814
9BLN|1|A|A|1815
9BLN|1|A|G|1816

Current chains

Chain A

rRNA

Nearby chains

Chain 9

Small ribosomal subunit protein eS32

Chain E

Small ribosomal subunit protein uS12