IL_9BS0_001
3D structure
- PDB id
- 9BS0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- YphC-treated 45SYphC particle. Class 5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BS0_001 not in the Motif Atlas
- Homologous match to IL_4WF9_001
- Geometric discrepancy: 0.1328
- The information below is about IL_4WF9_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.2
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9BS0|1|A|G|24
9BS0|1|A|U|25
9BS0|1|A|G|26
9BS0|1|A|G|27
9BS0|1|A|A|28
9BS0|1|A|U|29
9BS0|1|A|G|30
*
9BS0|1|A|C|556
9BS0|1|A|U|557
9BS0|1|A|G|558
9BS0|1|A|A|559
9BS0|1|A|A|560
9BS0|1|A|A|561
9BS0|1|A|C|562
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein bL20
- Chain N
- Large ribosomal subunit protein uL22
- Chain T
- Large ribosomal subunit protein bL32
Coloring options: