IL_9BS0_009

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_009 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.1478

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9BS0|1|A|C|241
9BS0|1|A|U|242
9BS0|1|A|G|243
9BS0|1|A|A|244
9BS0|1|A|G|245
9BS0|1|A|U|246
9BS0|1|A|A|247
9BS0|1|A|G|248
*
9BS0|1|A|C|256
9BS0|1|A|G|257
9BS0|1|A|A|258
9BS0|1|A|A|259
9BS0|1|A|A|260
9BS0|1|A|C|261
9BS0|1|A|G|262

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

Large ribosomal subunit protein uL15