IL_9BS0_014

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

9BS0|1|A|A|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_014 not in the Motif Atlas

Geometric match to IL_1U63_004

Geometric discrepancy: 0.3587

The information below is about IL_1U63_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

9BS0|1|A|G|344
9BS0|1|A|A|345
9BS0|1|A|G|346
*
9BS0|1|A|C|359
9BS0|1|A|C|360

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

Large ribosomal subunit protein uL24