IL_9BS0_038
3D structure
- PDB id
- 9BS0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- YphC-treated 45SYphC particle. Class 5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUACCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 9BS0|1|A|A|1173, 9BS0|1|A|U|1176, 9BS0|1|A|A|1179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BS0_038 not in the Motif Atlas
- Homologous match to IL_5J7L_281
- Geometric discrepancy: 0.2122
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9BS0|1|A|G|1070
9BS0|1|A|G|1071
9BS0|1|A|A|1072
9BS0|1|A|A|1073
9BS0|1|A|A|1074
9BS0|1|A|A|1075
9BS0|1|A|G|1076
*
9BS0|1|A|C|1170
9BS0|1|A|G|1171
9BS0|1|A|A|1172
9BS0|1|A|A|1173
9BS0|1|A|A|1174
9BS0|1|A|A|1175
9BS0|1|A|U|1176
9BS0|1|A|G|1177
9BS0|1|A|U|1178
9BS0|1|A|A|1179
9BS0|1|A|C|1180
9BS0|1|A|C|1181
9BS0|1|A|G|1182
9BS0|1|A|G|1183
9BS0|1|A|G|1184
9BS0|1|A|G|1185
9BS0|1|A|C|1186
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain G
- Large ribosomal subunit protein uL13
Coloring options: